_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-28
 Query name: gi|923769232|ref|XP_013767932.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like [Pundamilia nyererei] >gi|930733273|ref|XP_014188564.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Haplochromis burtoni]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/666864228/tempfiles/temptarget.fasta
 Chromosome: OMLM01021133.1:subseq_3146,68564_ Strand: -
 Positions:
 -Exon 1  53352        53417
 -Exon 2  52513        52607
 -Exon 3  52243        52387
 -Exon 4  51749        51900
 -Exon 5  50186        50210
 -Exon 6  50003        50062
 -Exon 7  49742        49771

 Redox box: no

Query   MWLWRSSAVLSVVGSRGVVRSM <---Intron---> CAQVGDWHSAKSIYEFSAKDIDGDEVSLEKYR <---Intron---> GYVCIIVNVASKUG
        ||/  || /| /||||||/|/| <   744bp    > ||||||||/||||||||||||||/|||||||/ <   125bp    > ||||||||||||||
Target  MWIRGSSVLLGLVGSRGVLRTM                CAQVGDWHTAKSIYEFSAKDIDGNEVSLEKYK                GYVCIIVNVASKUG
        ataagttgccgcggaaggcaaa                tgcgggtcagatatgttgagaggaggtcgata                gtgtaagaggtatg
        tgtggcctttgttggggttgct                gcatgagaccactaatccaatagaatctaaaa                gatgtttatccagg
        ggcactggggtggtcaccgatg                ttggacgttcgaccgttcgtttccggttaac                actgccactgctaaa
                                                                                                          * 

Query   KTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ <---Intron---> EPGTEAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKAQPKGKGTLG
        ||/||||||| || /||||||||/|||||||||| <   342bp    > ||||||||||||||||||||||||||||||/|||||||||||||||||||
Target  KTKVNYTQLAEMHVNYAEKGLRIMGFPCNQFGGQ                EPGTEAEIKEFAKGYNAEFDLFSKIEVNGDDAHPLWKWMKAQPKGKGTLG
        aaagataccggacgatggagtcaagtctactggc                gcgagggaagtgagtaggtgctaaaggaggggccctataagccagagacg
        acataacatcatataacaagtgttgtcgaatgga                acgcacataatcagaacatattgatatagaacactgagtacacagagctg
        gcaacctgagagcccttgataccgccaccgtaag                aattgaatagttatcttgtccctgtggtacttcttgggggtgcacgacga
                                                                                                            

Query   N <---Intron---> NIKWNFTK <---Intron---> FLINREGQVVKRYGPTDDPS <---Intron---> VVEKDLPTYL
        | <   1538bp   > |||||||| <   123bp    > |||/|||||||||||||||  <   231bp    > ||||||||||
Target  N                NIKWNFTK                FLIDREGQVVKRYGPTDDPR                VVEKDLPTYL
        a                aaatataa                tcagaggcggaatgcaggca                gggagccatc
        a                atagatca                tttagagattagagccaacg                ttaaatccat
                        cctagccag                ttttagaagggatcaattcg                ggggcgcgcc
                                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 61 ; UGA-SECIS: 433

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01021133.1:subseq_3146,68564_ Strand = - Positions = 49680 - 49603
 Found by:  Infernal (score=30.83) Covels (score=32.12)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -10.82

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((({(.......{[[{(({(((((([(...............)]))))))}))}]]}.....-...)})))))..
 target  UGUGUAUCUGGACCAGUGACGGCCUGUCUGUAAACCCAGCGUUGGGAAGGGCAGACCUGAUGAUCC-UUAGCGUGCAAC
                         ****           ^^^                       ****